Man, your the first conversation starter here in weeks. I have gotten more PM's over the last 3 weeks, than conversation here in the engine section---and that never happened before. Thanks for sparking conversation.
People often confuse torque with lower RPM power, but if you want higher RPM power, you have to increase torque at higher RPM also. To me, if you want to enhance the power at any given rpm range (lower rpm or higher rpm), you have to increase the torque at that rpm range. The formula is ("torque" times "rpm") divided by "5252" = HP at the rpm plugged into the formula. If you plug in 16,000 rpm as your peak power rpm desired, it is only the torque that you have to raise to increase power at 16,000rpm. As a result of increased torque, you will get increased HP at any RPM. If your engine work increases torque at higher RPM, your engine should also rev further, because it has added torque to do so. Porting is only one factor of the engines performance also, and what pipe you use is probably a bigger factor. The proper way to build a engine is design the porting for your application, and then design a pipe to match that porting, but if you don't make your own pipes, you are at the mercy of the pipes on the market. I don't build my own pipes, so I choose what I think is the best pipe on the market to work with, so I choose the QD hot pipes for the boat racing applications.
You say-
"reduce squish will create more torque" But that usually requires lowering the cylinder with thinner base gaskets or no gasket at all. A tighter squish will force more of the fuel/air charge into the combustion chamber, closer to the plug for a more complete burn, but the lower RPM torque is more due to the ports being lowered (exhaust port mainly) and a slightly higher compression ratio.
"enlarge exhaust timing will give us more RPM but reduce torque" This tends to produce less torque at lower RPM's, but increase torque at higher RPM's. Also, port time is only one factor of the ports capability at any given RPM (but probably the biggest factor). It is "port time area" that gives the whole picture of how the port will function at any given rpm. "Port time area" is a function of the area of the port, and the location (time) of the port together. QD cylinders with a bridged exhaust port is a excellent example of this. The 34mm bore cylinders I worked with have a bridge down the middle of the port, and that allows QD to make a very wide exhaust port, but still make outstanding power at 16,000rpm with port duration under 180 degrees. The rule of thumb is go wide, before you go up (exhaust) or down (intake), and you should be able to get the power you want with out making the power curve (rpm range of useable power) too narrow. Boat racing is one of the few applications that can tolerate a narrow power curve, but you have to stay in that narrow curve to be effective. Make a mistake that causes you to fall out of that power curve, and the boat can lose big time trying to get back into the power. Even though a powerful but narrow curve can give tough to beat lap times for boat racing, more driver skill and luck will be needed to make it work lap after lap in racing conditions IMO.
"what is intake and transfer timing for? and what is the effect ?" For boat racing, people are usually looking for more top end power/torque. As rpm rises, all of the ports are open for less time, but the cylinder volume remains the same. Think of port time area size and location as having enough time/area open to fill and evacuate the cylinder at the higher rpm, and your torque should go up at those higher rpm's---given you don't use a pipe that hinders your ports performance targets.
On this site, a couple of books are offered for reading. Most of us have read those older books. Study those books more than once, and you should start to gain the understanding pretty well. Then it will be time to practice what you have learned, but be careful not to jump to false conclusions of why you may not be getting the results you thought you would get. It is easy to jump to false conclusions, and move your work in the wrong direction, because just about all the factors overlap each other. For example--simply tightening your squish by lowering the cylinder is actually effecting at least 5 factors that overlap, and that can make it hard to come up with the correct conclusions if you don't understand the contributions of each factor---and sometimes even if you do. The trick is to find what factors are involved, find the factors that contribute the most (to fix first), and controlling the factors as well as you can. That is the basic plan of most every engineering testing.
Also---remember this quote of a man I worked with at my very first machine shop 30 years ago. "The day you think you know it all, is probably the day you have a lot to learn."
Have fun
Doug @ ESP